This list is what I found on those Junior schedules I listed. For anything that I have seen on recent years on Junior that aired subtitled, but might have aired dubbed back then, I've put "SUBTITLED" next to the title.

Series:
Kutia magjike (Shoebox Zoo, 2004) SEMI-ANIMATED
Liliputët (The Borrowers, 1992)
Kutia e mrekullive (Box of Delights, 1984)
Të jesh Eva (Being Eve, 2001)
Unë nuk jam kafshë - (I Am Not an Animal, 2004) ANIMATED
Merlini - Merlin (1998), miniseries
Futurama (highest episode 52, although possibly could have gone a bit further) ANIMATED 
Haidi (unknown series, identified with the year 1999 and as animated)

20th Century Fox
Kampi hapësinor - Space Camp (1986)
Nusja e princit - The Princess Bride (1987)
Zonja Doubtfire - Mrs. Doubtfire (1993) SUBTITLED 
Loja e bejzbollit - The Sandlot (1993)
Shëtitja e bebit - Baby's Day Out (1994)
Legjenda e një dashurie - Ever After (1998)
Doktor Dulitëll 2 - Dr. Dolittle 2 (2001)
Lufta e yjeve II - Star Wars: Episode II - Attack of the Clones (2002)
4 fantastikët - Fantastic Four (2005)
Robotët - Robots (2005) ANIMATED, now airs on Bang Bang/Çufo

Buena Vista Pictures
Tre të arratisurit - Three Fugitives (1989)
Tre burra dhe një vogëlushe - Three Men and a Little Lady (1990) SUBTITLED 
Motrat gazmore - Sister Act (1992) SUBTITLED 
Djali i vogël - Disney's The Kid (2000) SUBTITLED 
Rreth botës për 80 ditë - Around the World in 80 Days (2004)
Hidalgo - Hidalgo (2004)
Të rrisësh Helenën - Raising Helen (2004) SUBTITLED (on Top Channel)
Heronjtë me pupla - Valiant (2005) ANIMATED, now airs on Bang Bang/Çufo

DreamWorks
Rrefenjë peshkaqenësh - Shark Tale (2004) ANIMATED, now airs on Bang Bang/Çufo

Paramount Pictures (producer or distributor, producer has a tick next to the side)
Gjithçka dua për Krishtlindje - All I Want For Christmas (1991)
Lesi - Lassie (1994)
Spiunia Herriet / Harriet the Spy (1996) ✓ SUBTITLED 
Grabitësja e varreve - Lara Croft: Tomb Raider (2001)
Lara Kroft 2: Djepi i jetës - Lara Croft Tomb Raider 2: The Cradle of Life (2003)
Shkolla e rrokut / School of Rock (2003) SUBTITLED 
Një seri ngjarjesh fatkeqe - Lemony Snicket's A Series of Unfortunate Events (2004)

Walt Disney
I rrëmbyeri - Kidnapped (1960)
I shëmtuari Brutus - The Ugly Dachshund (1966)
Na mungon një dinosaur - One of Our Dinosaurs is Missing (1975)
I Man - I-Man (1986)
Benxhi shpëtimtari - Benji, the Hunted (1987)
Dhëmbi i bardhë - White Fang (1991)
Legjenda e ujkut të bardhë - White Fang 2: Myth of the White Wolf (1994)
Burri i shtëpisë - Man of the House (1995)
Xhejmsi dhe pjeshka gjigande - James and the Giant Peach (1996) ANIMATED
Flaberi - Flubber (1997)
Nga xhungla në xhungel - Jungle 2 Jungle (1997)
Buburreci i dashuruar - The Love Bug (1997)
Një kalorës në Kamelot - A Knight in Camelot (1998)
Gracka e prindërve - The Parent Trap (1998)
Mos shiko nën shtrat - Don't Look Under the Bed (1999)
Inspektori Gaxhet - Inspector Gadget (1999) SUBTITLED 
Ringjallja e kukullës - Life-Size (2000)
Mami ka njohur një vampir - Mom's Got a Date with a Vampire (2000)
Përgjithmonë Tak - Tuck Everlasting (2002)
Inspektori Gaxhet 2 - Inspector Gadget 2 (2003)
Piratët e Karaibeve: Mallkimi i perlës së zezë - Pirates of the Caribbean: the Curse of the Black Pearl (2003)
Hamshori i zi - Young Black Stallion (2003)
Moda e mafias - Crimes of Fashion (2004)
Rrëfimet e një adoleshenteje - Confessions of a Teenage Drama Queen (2004)
Fantastiket - The Incredibles (2004) ANIMATED, now airs on Bang Bang/Çufo
Ditari i princeshës 2 - The Princess Diaries 2: Royal Engagement (2004)
Rikthimi i Herbit - Herbie: Fully Loaded (2005)
Princesha e akullit - Ice Princess (2005) SUBTITLED 

Universal Pictures
Jashtëtokësori - E.T. the Extra-Terrestrial (1982)
Bethoven 1 - Beethoven (1992)
Bethoven 2 - Beethoven's 2nd (1993)
Kasper - Casper (1995) SUBTITLED 
Xhurasik Park II - The Lost World: Jurassic Park (1997)
Bethoven 4 - Beethoven's 4th (2001)
Xhosi dhe maçkat - Josie and the Pussycats (2001)
Xhurasik Park III - Jurassic Park III (2001)
Gënjeshtari i tmerrshëm / Big Fat Liar (2002) SUBTITLED, in fact, it has always been subtitled, I found a 2005 Junior screenshot of this movie and it had subtitles, so confirmed no dub
Hani - Honey (2003) SUBTITLED 
Piter Pan - Peter Pan (2003)
Zogjtë e stuhisë - Thunderbirds (2004)

Warner Bros. (mostly distributor, if producer it's mentioned)
Histori e pafund - The NeverEnding Story (1984)
Kaçurrelja Su - Curly Sue (1991)
Martesë me katër duar - It Takes Two (1995)
Dy binjake futbolliste - Switching Goals (1999) CO-PRODUCER
Qeni im Skip - My Dog Skip (2000)
Herri Poter - Harry Potter and the Philosopher's Stone (2001) CO-PRODUCER, SUBTITLED 
Poshtë Smuçi - Death to Smoochy (2002)
Luni Tuns: Përsëri në aksion - Looney Tunes: Back in Action (2003)
Çfarë kërkon një vajzë - What a Girl Wants (2003)
Një histori Hirusheje - A Cinderella Story (2004)
Herri Poter 3 - Harry Potter and the Prisoner of Azkaban (2004) SUBTITLED, CO-PRODUCER
Treni Polar - The Polar Express (2004) ANIMATED, now airs on Bang Bang/Çufo
Çarli dhe fabrika e çokollatave - Charlie & the Chocolate Factory (2005) SUBTITLED, when this movie airs on Junior the second track is M&E
Herri Poter 4 - Harry Potter and the Goblet of Fire (2005) CO-PRODUCER, SUBTITLED 
Duma - Duma (2005)
Një zebër në garë - Racing Stripes (2005)


OTHER DISTRIBUTORS/PRODUCERS

BBC
Krenaria - Pride (2004)

Carlton Television
Poliana - Pollyanna (2003)

CINAR
Misioni i fshehtë - The Undercover Kid (1995)

Columbia Pictures
Gra të vogla - Little Women (1994)
Puthja ime e parë - My Girl 2 (1994) SUBTITLED 

De Laurentiis Entertainment Group
Une i dua Ponit / My Little Pony: The Movie (1986) ANIMATED 

RHI Entertainment
Nata që shpëtoi Krishtlindjet - The Night They Saved Christmas (1984)

Sony Pictures
Xhumanxhi - Jumanji (1995) SUBTITLED 
Maska e Zorros - The Mask of Zorro (1998)
Babai i madh - Big Daddy (1999) SUBTITLED
Njeriu merimangë - Spider-Man (2002) SUBTITLED 
Kopshti i baballarëve - Daddy Day Care (2003)
13 për 30 - 13 Going on 30 (2004)

Leucadia Film Production
Zogu i lamtumirës - The Goodbye Bird (1993)
Brigada e gazetave - The Paper Brigade (1996)

Live Entertainment
Qeni i policisë - Top Dog (1995)

Miramax
Fëmijët spiunë - Spy Kids (2001)
Ela e magjepsur - Ella Enchanted (2004)

Majestic Entertainment
Heronjtë e vegjël - Little Heroes (1991)

MGM
Fëmijët e hekurudhës - Railway Children (1970)
Porta e yjeve - Stargate (1994)
Stuhia e dëborës - Blizzard (2003)
Bratz - Bratz: Rock Angelz (2005) ANIMATED, now airs on Bang Bang/Çufo

New Line Cinema
Breshkat ninxha - Teenage Mutant Ninja Turtles (1990)
Ngrije zërin - Raise Your Voice (2004)

Tri-Star Pictures
Njësoj si babi - Like Father, Like Son (1987)
Dëgjo kush flet - Look Who's Talking (1989)
Dëgjo kush flet 2 - Look Who's Talking Too (1990)
Kapiten Gremçi - Hook (1991)
Dëgjo kush flet 3 - Look Who's Talking Now (1993)
Sekretet e vogla - Little Secrets (2001)

South Pacific Pictures
Vajza nga Marsi - The Girl from Mars (1991)

Hallmark
Liza në botën e çudirave - Alice In Wonderland (1999)

Hyperion Pictures
Kopshti i mesnatës - Tom's Midnight Garden (1999)

Roadshow Television/Entertainment
Kali i argjendtë - The Silver Brumby (1993)
Magjia e hapësirës - Hi-5: Space Magic (2004)

A&E Networks
Titaniku, legjenda vazhdon - Titanic: The Legend Lives On (1994) Coincidentally, this is titled the same as animated movie about the Titanic, which would later be dubbed by NGS Recording

New Line Cinema
Djali i maskës - Son of the Mask (2005)

Bohbot
Fushata e Tofetit - Roughnecks: Starship Troopers Chronicles, The Tophet Campaign (2001) ANIMATED 

Fox Television Pictures
I vetëm në shtëpi 4 - Home Alone 4 (2002)

Lifetime Television/Entertainment 
Një Krishtlindje ndryshe - A Different Kind of Christmas (1996)
Vajza e vogël - If You Believe (1999)

Hilltop Entertainment
Qentë e dëborës 1 - Chilly Dogs, original Kevin of the North (2001)

Pebblehut Productions
T'i prishim punë babit - Coming Unglued (1998)

ANIME (Ghibli)


Nauzika e luginës së erës - Kaze no tani no Naushika (1984)
Varri i xixëllonjave - Grave of the Fireflies (1988)
E djeshmja - Only Yesterday (1991)
E ndiej oqeanin - Ocean Waves or "I Can Hear The Sea" (1993)
Princesha Mononoke - Princess Mononoke (1999)



Unknown:
Le të festojmë
Udhëtimet e Guliverit (the person who posted it identified it as 1939 but I doubt they dubbed or aired a movie that old)
Për një fëmijë të lumtur (50 minutes)
Pinoku (50 minutes), seems to be a series
Mund të bëhesh balerinë